PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g072900.1.1
Common NameDREB3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 265aa    MW: 29534.2 Da    PI: 7.2353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g072900.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-2084133255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+  l+g
  Solyc04g072900.1.1  84 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 133
                         59******9.**********965...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-3283141No hitNo description
Gene3DG3DSA:3.30.730.103.0E-3284142IPR001471AP2/ERF domain
PROSITE profilePS5103222.72184141IPR001471AP2/ERF domain
SMARTSM003807.5E-3784147IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2384142IPR016177DNA-binding domain
PfamPF008474.1E-1485133IPR001471AP2/ERF domain
PRINTSPR003672.1E-118596IPR001471AP2/ERF domain
PRINTSPR003672.1E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNSQIFSTGF SGYGMEQQGS IGLNQLTPIQ IQQIQAQINF QNQQQQQQQQ MMLQTAHHAS  60
TMNFLAPKPV PMKQSGSPPK PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA  120
ALAYDKAAYM LRGDFARLNF PQLRHNGNLI GGDFGEYNPL HSSVDAKLKD ICQSLAQGKS  180
IDSKKKKTKG LSAEKAAVVK MEEEESKTAE VGSESDGSHS GSGGSSPVTE LIFPEFTEEE  240
PTWDMSENFL LQKYPSHEID WASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2183141160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.77390.0callus| flower| fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5068250.0Lycopersicon esculentum dehydration-responsive element binding protein 3 (DREB3) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234707.10.0dehydration-responsive element binding protein 3
RefseqXP_015074229.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E45e-86RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLQ8GZE80.0Q8GZE8_SOLLC; Dehydration-responsive element binding protein 3
STRINGSolyc04g072900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-59related to AP2 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]